Hepreac Class Reference

Collaboration diagram for Hepreac:

[legend]

List of all members.

Public Member Functions
String	getPath ()
String	getContextPath ()
String	getTestPath ()
String	getQueryParam (String param)
Paper	getPaper ()
void	setPaper (Paper p)
List< Paper >	getPapers ()
Dataset	getDataset ()
void	setDataset (Dataset d)
SortedSet< Dataset >	getDatasets ()
YAxis	getYAxis ()
void	setYAxis (YAxis y)
SortedSet< YAxis >	getYAxes ()
String	getFirstAuthorName ()
String	getFirstExperimentName ()
String	getFirstInformalName ()
String	getFirstPublished ()
String	getFirstPreprint ()
String	getTitle ()
boolean	isCkbx ()
void	setCkbx (boolean ckbx)
Link	getChart3 ()
XYIntervalSeries	getDataSeries (YAxis yaxis)
StreamResponse	onChart (final int width, final int height, final int numberRun, int number)

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Detailed Description

Definition at line 50 of file Hepreac.java.

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Member Function Documentation

String getPath

(

)

Definition at line 59 of file Hepreac.java.

Referenced by Hepreac.getTestPath().

                           {
       return _reqGlobals.getRequest().getPath();
    }

String getContextPath

(

)

Definition at line 62 of file Hepreac.java.

                                  {
       return _reqGlobals.getRequest().getContextPath();
    }

String getTestPath

(

)

Definition at line 66 of file Hepreac.java.

References Hepreac.getPath().

                               {
        return getPath().substring(getPath().lastIndexOf("/")+1); 
    }    

String getQueryParam

(

String

param

)

Definition at line 70 of file Hepreac.java.

                                             {
       return _reqGlobals.getRequest().getParameter(param);
    }

Paper getPaper

(

)

Definition at line 77 of file Hepreac.java.

{ return _paper; }

void setPaper

(

Paper

p

)

Definition at line 78 of file Hepreac.java.

{ _paper = p; }

List<Paper> getPapers

(

)

Definition at line 80 of file Hepreac.java.

                                   {
        Query q = constructQuery();
        // execute the query and return the list of results
        return q.list();   
    }

Dataset getDataset

(

)

Definition at line 88 of file Hepreac.java.

{ return _dataset; }

void setDataset

(

Dataset

d

)

Definition at line 89 of file Hepreac.java.

{ _dataset = d; }

SortedSet<Dataset> getDatasets

(

)

Definition at line 90 of file Hepreac.java.

                                            {
        return _paper.getDatasets();
    }

YAxis getYAxis

(

)

Definition at line 96 of file Hepreac.java.

{ return _yaxis; }

void setYAxis

(

YAxis

y

)

Definition at line 97 of file Hepreac.java.

{ _yaxis = y; }

SortedSet<YAxis> getYAxes

(

)

Definition at line 98 of file Hepreac.java.

                                       {
        return _dataset.getYAxes();
    }

String getFirstAuthorName

(

)

Definition at line 132 of file Hepreac.java.

                                     {
       ckbxs.put(0,false);
       int n = 0;
       String _firstauthor = "";
       for (String author : _paper.getAuthors()){
         n += 1;
         if(n == 1) {_firstauthor = author;}
       }
       String _refdate = "xx";
       for (Reference reference : _paper.getReferences()){
          _refdate = reference.getDate();
       }
        int _lref = _refdate.length();
       _firstauthor = _firstauthor + " " + _refdate.substring(_lref-2,_lref);
       return _firstauthor;
   }

String getFirstExperimentName

(

)

Definition at line 149 of file Hepreac.java.

                                         {
       int n = 0;
       String _firstexperiment = "";
       for (Experiment experiment : _paper.getExperiments()){
           n += 1;
           if(n == 1) { _firstexperiment = experiment.getName();}
       }
       return _firstexperiment;
   }

String getFirstInformalName

(

)

Definition at line 159 of file Hepreac.java.

                                      {
       int n = 0;
       String _firstinformal = "";
       for (Experiment experiment : _paper.getExperiments()){
           n += 1;
           if(n == 1) { _firstinformal = experiment.getInformalName();}
       }
       return _firstinformal;
   }

String getFirstPublished

(

)

Definition at line 169 of file Hepreac.java.

                                    {
       int n = 0;
       String _firstpublished = "Not Published";
       for (Reference ref : _paper.getReferences()){
           String refdesc = ref.getDescription();
           if(ref.getType().equals("JOUR")){
                 n += 1;
                 if(n == 1) { _firstpublished = refdesc;}
           }
       }
       return _firstpublished;
   }

String getFirstPreprint

(

)

Definition at line 182 of file Hepreac.java.

                                   {
       int n = 0;
       String _firstpreprint= "Not Known";
       System.out.println("number of references:" + _paper.getReferences().size());
       for (Reference ref : _paper.getReferences()){
           String refdesc = ref.getDescription();
           if(!ref.getType().equals("JOUR")){
                 n += 1;
                 if(n == 1) { _firstpreprint = refdesc;}
             
           }
       }
       return _firstpreprint;
   }

String getTitle

(

)

Definition at line 198 of file Hepreac.java.

                          {
       return _paper.getTitle();
   }    

boolean isCkbx

(

)

Definition at line 207 of file Hepreac.java.

                          { 
       _nloop += 1;
       if(_nloop > _maxmap){ _nloop=0;} 
       System.out.println("calling isCkbx" + _nloop); 
       return ckbxs.get(_nloop); 
    }

void setCkbx

(

boolean

ckbx

)

Definition at line 213 of file Hepreac.java.

                                     {
       _nloop += 1;
       if(_nloop > _maxmap){ _nloop=0;} 
       ckbxs.put(_nloop,ckbx); 
       System.out.println("calling setCkbx" + _nloop); 
    }   

Link getChart3

(

)

Definition at line 232 of file Hepreac.java.

References Hepreac.getDataSeries().

                           {          
        if (numberRun > 10000) {
            numberRun=0;
        }
        numberRun +=1;
        XYIntervalSeries series1 = getDataSeries(_yaxis);
        seriesMap.put(numberRun,series1);
        xLabelMap.put(numberRun,_yaxis.getDataset().getXAxis(1).getHeader());
        yLabelMap.put(numberRun,_yaxis.getHeader());
       return _resources.createActionLink("chart", false, new Object[]{"400","400",numberRun,"1"});
    }

XYIntervalSeries getDataSeries

(

YAxis

yaxis

)

Definition at line 245 of file Hepreac.java.

Referenced by Hepreac.getChart3().

                                                      {
        XAxis _xaxis =  yaxis.getDataset().getXAxis(1);
//      System.out.println(_xaxis.toString());
        for (String comment : yaxis.getDataset().getComments()){
            System.out.println(comment);
            titlestring = comment;
        }
        XYIntervalSeries series = new  XYIntervalSeries("data1");
        for (int ip=1; ip<=yaxis.getPoints().size(); ip++){
            try{
            double y = yaxis.getPoint(ip).getValue();
            double eplus = 0.0;
            double eminus = 0.0;
            for (Uncertainty e : yaxis.getPoint(ip).getErrors()){
               if(e.getNormType() == ErrorNorm.PCT){
                 eplus = eplus + (y*e.getPlus()/100.0)*(y*e.getPlus()/100.0);
                 eminus = eminus + (y*e.getMinus()/100.0)*(y*e.getMinus()/100.0);
               } 
               else{
                 eplus = eplus + e.getPlus()*e.getPlus(); 
                 eminus = eminus - e.getMinus()*e.getMinus();
               }
            }
            eplus = Math.sqrt(eplus);
            eminus = Math.sqrt(eminus);
            double yhigh = y + eplus;
            double ylow = y - eplus;
            double x;
            double xhigh;
            double xlow;
            if(_xaxis.getBin(ip).getLowValue() != null  && _xaxis.getBin(ip).getHighValue() != null){
                x = (_xaxis.getBin(ip).getLowValue()+_xaxis.getBin(ip).getHighValue())/2;
                xlow =  _xaxis.getBin(ip).getLowValue();
                xhigh =  _xaxis.getBin(ip).getHighValue();
            }
            else{
                x = _xaxis.getBin(ip).getFocus();
                xhigh = _xaxis.getBin(ip).getFocus();
                xlow = _xaxis.getBin(ip).getFocus();
            }
            series.add(x,xlow,xhigh,y,ylow,yhigh);
            } catch(Exception e){}
        }
        return series;
    }

StreamResponse onChart	(	final int	width,
		final int	height,
		final int	numberRun,
		int	number
	)

Definition at line 292 of file Hepreac.java.

                                                                                                     {
 
        final XYIntervalSeriesCollection collection = new XYIntervalSeriesCollection();
        double xlow = 1000000.0;
        double xhigh = -1000000.0;
        double ylow = 1000000.0;
        double yhigh = -1000000.0;
        for (int n=0; n<number; n++){
            
            XYIntervalSeries series = (XYIntervalSeries) seriesMap.get(numberRun+n);
            int nitems = series.getItemCount();
            for (int nn=0; nn<nitems; nn++){
              if(series.getXLowValue(nn) < xlow){ xlow = series.getXLowValue(nn);};     
              if(series.getXHighValue(nn) > xhigh){ xhigh = series.getXHighValue(nn);};     
              if(series.getYLowValue(nn) < ylow){ ylow = series.getYLowValue(nn);};     
              if(series.getYHighValue(nn) > yhigh){ yhigh = series.getYHighValue(nn);};     
            }
            seriesMap.remove(numberRun+n);
            collection.addSeries(series);
        }
        xlow = xlow - 0.05*(xhigh-xlow);
        xhigh = xhigh + 0.05*(xhigh-xlow);
        ylow = ylow - 0.05*(yhigh-ylow);
        yhigh = yhigh + 0.05*(yhigh-ylow);
        if(xlow == xhigh){
              xlow = 0.90*xlow;
              xhigh= 1.10*xhigh;
        }
        IntervalXYDataset data1 = collection;
 
        final XYItemRenderer renderer1 = new XYErrorRenderer();
        final Range rangex = new Range(xlow,xhigh);
        final Range rangey = new Range(ylow,yhigh);
        final NumberAxis rangeAxisX = new NumberAxis();
        try {
              String xlabel = (String) xLabelMap.get(numberRun);
              rangeAxisX.setLabel(xlabel);
        } 
        catch(Exception e){          
           rangeAxisX.setLabel("xaxis label ?");
        }
        rangeAxisX.setRange(rangex);
//        rangeAxisX.setAutoRangeIncludesZero(false);
        final NumberAxis rangeAxisY = new NumberAxis();
        try{
            String ylabel = (String) yLabelMap.get(numberRun);
            rangeAxisY.setLabel(ylabel);
        }
        catch (Exception e){
             rangeAxisY.setLabel("yaxis label ?");
       }
        rangeAxisY.setRange(rangey);
//        final LogarithmicAxis rangeAxisY = new LogarithmicAxis(_yaxis.getHeader());
//        rangeAxisY.setAllowNegativesFlag(true);
//        rangeAxisY.setStrictValuesFlag(false);
//        rangeAxisY.setAutoRangeNextLogFlag(true);
        final XYPlot subplot1 = new XYPlot(data1, rangeAxisX, rangeAxisY, renderer1);
        final TextTitle title = new TextTitle(titlestring);
        final JFreeChart chart = new JFreeChart(subplot1);
        chart.addSubtitle(title);
        return new StreamResponse(){
            public String getContentType(){
                return "image/jpeg";
            }
            public InputStream getStream() throws IOException {
                BufferedImage image  = chart.createBufferedImage(width, height);
                ByteArrayOutputStream byteArray = new ByteArrayOutputStream() ;
                ChartUtilities.writeBufferedImageAsJPEG(byteArray, image) ;
                return new ByteArrayInputStream(byteArray.toByteArray());
            }
            public void prepareResponse(Response response){}
        };
    }

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The documentation for this class was generated from the following file:

• /home/buckley/hepdata/codedocs/src/hepdata/hepdata-webapp/src/main/java/cedar/hepdata/webapp/pages/Hepreac.java